clampFISH 2.0: Fast, Cost-Effective RNA Detection Using Potent Fluorescent Probes

Molecular diagnostic using clamping fluorescent probes to amplify RNA detection signal of single-cell assay
Problem:
The molecular diagnostics market is expected to reach $13 billion by 2024, including cancer detection, blood screening, histology assays, tests for transplant compatibility, and inherited and infectious diseases (The World Market for Molecular Diagnostics, 8th Edition, 2019.) RNA detection is a type of  molecular diagnosis that is estimated to make up $800 million by 2024, but it is limited by low signal.
Solution:
To improve RNA detection, clampFISH physically “clamps” the traditional probes onto the target RNA using common, efficient click-chemistry. The clamped probe attracts many fluorescent amplifier probes, increasing the signal. Its high cost hinders this first clampFISH version. The new clampFISH 2.0 obtains 400-fold signal amplification for detecting RNA while also reducing cost, increasing specificity, and shortening the protocol.
Technology:
clampFISH 2.0 utilizes redesigned, smaller clamping probes to bind target RNA. The new design is modular, requiring only one custom chemical modification. These improvements reduce the cost of probe production significantly. The new design also improves selectivity, shortening washing steps and overall protocol time.




Microscopy images showing a sharper readout with an gene expression example; here the example gene is AXL, which encodes the cell surface receptor tyrosine kinase. Using a faster protocol, clampFISH 2.0 provides a clearer picture (right panel) versus a common alternative for RNA detection (left panel- labelled smFISH for single molecule fluorescence in situ hybridization).
Advantages:

  • Provides 400X amplification of signal for detecting RNA molecules on a cell-by-cell basis as compared to traditional fluorescent probes
  • Shorter nucleotide probes (90nt versus 140-142nt in first clampFISH version) reduce protocol cost and increase signal specificity
  • Protocol time is significantly reduced compared to the first clampFISH version
  • RNA and DNA detection can be overlaid

Stage of Development:

  • Bench Prototype

Intellectual Property:

Reference Media:

Desired Partnerships:

  • License
  • Co-development

Docket #20-9229

Patent Information: